Friday, September 16, 2016

Ctrl-C caught... cleaning up processes

We were submitting a NAMD Job and we have an error logs as well as

"Ctrl-C caught... cleaning up processes"
To solve the issues,  you may want to first decide to whether there are Windows Format traces in the input files

$ dos2unix inputfile

[mpiexec@comp175] HYD_pmcd_pmiserv_send_signal (./pm/pmiserv/pmiserv_cb.c:239): assert (!closed) failed
[mpiexec@comp175] ui_cmd_cb (./pm/pmiserv/pmiserv_pmci.c:127): unable to send SIGUSR1 downstream
[mpiexec@comp175] HYDT_dmxu_poll_wait_for_event (./tools/demux/demux_poll.c:77): callback returned error status
[mpiexec@comp175] HYD_pmci_wait_for_completion (./pm/pmiserv/pmiserv_pmci.c:435): error waiting for event
[mpiexec@comp175] main (./ui/mpich/mpiexec.c:901): process manager error waiting for completion

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